OpenFold
AlQuraishi LaboratoryOpenFold is a trainable PyTorch reproduction of AlphaFold from the AQLab consortium. Unlike the reference implementation it ships training as well as inference code, its own from-scratch trained parameters, and OpenProteinSet, some 400,000 MSAs and PDB70 template hit files hosted on the Registry of Open Data on AWS. OpenFold3 extends the line to an all-atom AlphaFold 3-class model.
The OpenFold3 Hugging Face repository is Apache-2.0 but auto-gated behind a name-and-affiliation form, so its download counter reads zero and cannot carry the adoption signal. Verified 2026-09-10 via the GitHub API, the repository README and original README, the training documentation, the Hugging Face API, and the AWS open-data registry entry.
Openness
5 high confidence- weights
- open(Apache-2.0 OpenFold3 checkpoints behind an auto-approved form, and OpenFold's own AlphaFold 2-reproduction parameters fetched by repository scripts)
- data
- open(OpenProteinSet, some 400,000 MSAs and PDB70 template hit files, on the AWS Registry of Open Data)
- code
- open(train_openfold.py plus a documented end-to-end training guide, not inference alone)
- license
- Apache-2.0(OSI)
The reason OpenFold exists is the reason it reaches the top rung - it was built to be retrained, and the corpus, the pipeline and the resulting weights all shipped under one OSI license. The evidence is the AlphaFold-2 reproduction SKU specifically - OpenProteinSet on the AWS open-data registry, paired with train_openfold.py and its training guide. OpenFold3-preview ships checkpoints without an equivalent published corpus or pipeline, so it rides on the line's score rather than earning it; the OF2 SKU carries the 5 on its own. The CC-BY-4.0 note in the repository covers DeepMind's parameters, which OpenFold can also load; it does not govern OpenFold's own release.
- https://huggingface.co/api/models/OpenFold/OpenFold3 recorded 2026-09-10
license: apache-2.0; private: false; gated: auto with the prompt "The OpenFold3-preview model is released under Apache 2.0 license. You will automatically get access to the model after answering the following simple questions"; four checkpoints/*.pt files present.
- https://raw.githubusercontent.com/aqlaboratory/openfold/main/docs/source/original_readme.md recorded 2026-09-10
"We've publicly released model weights and our training data - some 400,000 MSAs and PDB70 template hit files - under a permissive license. Model weights are available via scripts in this repository while the MSAs are hosted by the Registry of Open Data on AWS."
- https://registry.opendata.aws/openfold/ recorded 2026-09-10
OpenProteinSet listed on the Registry of Open Data on AWS as a public dataset, cited as OpenFold's training data.
- https://openfold.readthedocs.io/en/latest/Training_OpenFold.html recorded 2026-09-10
A training guide covering how to train an OpenFold model from the RODA dataset and how to fine-tune it, alongside a separate page on setting up the PDB training set.
- https://raw.githubusercontent.com/aqlaboratory/openfold/main/LICENSE recorded 2026-09-10
Apache License Version 2.0 body, matching the license the GitHub API reports for the repository.
Adoption
2 medium confidenceThe gated OpenFold3 endpoint reports zero downloads, which measures the gate rather than the reach, so 3,423 GitHub stars are used as the last-resort signal.
- https://api.github.com/repos/aqlaboratory/openfold recorded 2026-09-10
stargazers_count: 3423; archived: false; fork: false.
- https://huggingface.co/api/models/OpenFold/OpenFold3 recorded 2026-09-10
downloads: 0 against likes: 44, on a gated: auto repository.
Capability
3 high confidenceTwo attributes, and the adaptation one is the whole point of the project - the README's first line is that this is a trainable reproduction, and the docs carry a training guide rather than a fine-tuning notebook bolted onto an inference release.
- https://raw.githubusercontent.com/aqlaboratory/openfold/main/README.md recorded 2026-09-10
"A faithful but trainable PyTorch reproduction of DeepMind's AlphaFold 2", with docs carrying instructions for installation and model inference and training.
- https://raw.githubusercontent.com/aqlaboratory/openfold/main/docs/source/original_readme.md recorded 2026-09-10
Training data is MSAs and PDB70 template hit files alongside sequence; the repository ships train_openfold.py beside run_pretrained_openfold.py.
Verified 2026-09-10