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OpenFold

AlQuraishi Laboratory
open source / Overall score: 2.7

OpenFold is a trainable PyTorch reproduction of AlphaFold from the AQLab consortium. Unlike the reference implementation it ships training as well as inference code, its own from-scratch trained parameters, and OpenProteinSet, some 400,000 MSAs and PDB70 template hit files hosted on the Registry of Open Data on AWS. OpenFold3 extends the line to an all-atom AlphaFold 3-class model.

The OpenFold3 Hugging Face repository is Apache-2.0 but auto-gated behind a name-and-affiliation form, so its download counter reads zero and cannot carry the adoption signal. Verified 2026-09-10 via the GitHub API, the repository README and original README, the training documentation, the Hugging Face API, and the AWS open-data registry entry.

Openness

5 high confidence
5.0
weights
open(Apache-2.0 OpenFold3 checkpoints behind an auto-approved form, and OpenFold's own AlphaFold 2-reproduction parameters fetched by repository scripts)
data
open(OpenProteinSet, some 400,000 MSAs and PDB70 template hit files, on the AWS Registry of Open Data)
code
open(train_openfold.py plus a documented end-to-end training guide, not inference alone)
license
Apache-2.0(OSI)

The reason OpenFold exists is the reason it reaches the top rung - it was built to be retrained, and the corpus, the pipeline and the resulting weights all shipped under one OSI license. The evidence is the AlphaFold-2 reproduction SKU specifically - OpenProteinSet on the AWS open-data registry, paired with train_openfold.py and its training guide. OpenFold3-preview ships checkpoints without an equivalent published corpus or pipeline, so it rides on the line's score rather than earning it; the OF2 SKU carries the 5 on its own. The CC-BY-4.0 note in the repository covers DeepMind's parameters, which OpenFold can also load; it does not govern OpenFold's own release.

Adoption

2 medium confidence
2.0

The gated OpenFold3 endpoint reports zero downloads, which measures the gate rather than the reach, so 3,423 GitHub stars are used as the last-resort signal.

Capability

3 high confidence
3.0

Two attributes, and the adaptation one is the whole point of the project - the README's first line is that this is a trainable reproduction, and the docs carry a training guide rather than a fine-tuning notebook bolted onto an inference release.

Verified 2026-09-10