Wang Lab

weights

open(ungated whole-human, organ-specific, and pan-cancer checkpoint folders)

data

closed(33 million pretraining cells described in the preprint with no corpus or reconstruction scripts released)

code

partial(fine-tuning, inference, and reference-mapping examples

license

MIT(OSI)

scGPT is an openly licensed checkpoint zoo with adaptation code, but the repository's own to-do list still carries the pretraining code, and the corpus was never released.

• https://raw.githubusercontent.com/bowang-lab/scGPT/main/README.md recorded 2026-09-10

  Lists eight downloadable pretrained checkpoint folders, describes pretraining on 33 million normal human cells without releasing the corpus, ships a fine-tuning example, and leaves "Provide the pretraining code with generative attention masking" unchecked.

• https://raw.githubusercontent.com/bowang-lab/scGPT/main/LICENSE recorded 2026-09-10

  MIT License body covering the repository, read directly rather than from the license endpoint.